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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11359771_11360103_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11359771 - 11360103
Intron Length:
333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGATTT
5'SS Class:
major
3'SS Sequence:
CAATTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
GTCAATTTAAAA
Flanking Amino Acid:
LDLKNEALRERHWQDLMERT
Intron Amino Acid Position:
1257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
75.4
34.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
60.9
0.25
1.1
56
42.1
Minor 5ss
46.3
-0.4
2.8
65.6
45.6
Minor BPS
49.7
-0
1.6
59.22
40.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294