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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11360312_11361006_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11360312 - 11361006
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGTATGCA
5'SS Class:
major
3'SS Sequence:
TGTTCCCAGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTTCCCAGGC
Flanking Amino Acid:
IYEIYELQKVAKEEWSRTLW
Intron Amino Acid Position:
1188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
66.2
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
66.8
0.38
1.1
63
38.6
Minor 5ss
33
-1.9
3.1
41.1
45.4
Minor BPS
40.8
-0.7
2.2
54.74
43.4

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294