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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11361190_11361420_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11361190 - 11361420
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTATCTAGAAAA
Flanking Amino Acid:
PGSVGENLDKGLELLAIFEK
Intron Amino Acid Position:
1127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74.8
35.6
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.1
0.75
0.7
76
32.5
Minor 5ss
31.4
-2.1
3.2
40.8
45.4
Minor BPS
50.3
0.01
1.8
67.85
37.7

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294