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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11361524_11361592_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11361524 - 11361592
Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATATTT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
ACAACTTAAACA
Flanking Amino Acid:
LGGIKKKFTEMTQQQIEEYS
Intron Amino Acid Position:
1093

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
83.5
28.8
Major BPS
69
0.47
1
69.9
32.6
Major PPT
79.3
0.66
0.8
77.8
31.1
Minor 5ss
43.9
-0.7
3.1
65.3
45.8
Minor BPS
51.5
0.04
1.7
59
40.8

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294