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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11361700_11362103_R

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11361700 - 11362103
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAATGTT
5'SS Class:
major
3'SS Sequence:
TAGATAGCTGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAGAT
U12 Branch Point Sequence:
TTTGTTTTAGAT
Flanking Amino Acid:
RTLAMYSIPVKEQEMADKIK
Intron Amino Acid Position:
1057

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
77.4
30.5
Major BPS
79.2
0.72
1
75
40
Major PPT
52.2
0.05
1.2
50.1
42.9
Minor 5ss
34.2
-1.8
3.5
48.7
41.9
Minor BPS
55
0.23
1.7
76.29
40.8

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294