About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11367804_11368135_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11367804 - 11368135
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
TTTTCCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TGATCTTTAAAA
Flanking Amino Acid:
DLLTSERGKEVKQMYLKVAK
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.2
37
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
88.1
0.86
0.6
81.5
30.4
Minor 5ss
49.7
-0
2.4
66.6
38.9
Minor BPS
71
0.65
1.3
74.57
36.3

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021615
11362692 - 11374105
11414
ENSAPLT00000014736
11323140 - 11378433
55294