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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11368313_11369857_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11368313 - 11369857
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
TATTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TGATTCTTAGCA
Flanking Amino Acid:
IMGEFRTEVSVENVKQIFVQ
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
83.6
0.76
0.7
82
29.5
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
65.9
0.5
1.5
72.93
38.6

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294