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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11371686_11372248_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11371686 - 11372248
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
ATATATTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATATATTTAATA
Flanking Amino Acid:
FLSTLERYLKNLTHGTGFDV
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
67.5
0.4
1
63.2
42
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
65.8
0.49
1.4
71.62
34.1

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021615
11362692 - 11374105
11414
ENSAPLT00000014736
11323140 - 11378433
55294