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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11373302_11373996_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11373302 - 11373996
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
TTTCTCCCAACA
Flanking Amino Acid:
ITQQMVQQIEGEIKLDMPTI
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.7
0.65
0.8
74.5
29.3
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
54.9
0.15
1.9
73.95
37.2

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021615
11362692 - 11374105
11414