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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11373321_11374666_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
0
Intron Coordinates:
11373321 - 11374666
Intron Length:
1346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTTTTCTGT
5'SS Class:
weak_minor
3'SS Sequence:
CAGTTAATTTCAG|A
3'SS Class:
minor_hybrid
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
AGACAGTTAATT
Flanking Amino Acid:
VLWLLYVKFSMPFLPTGEIK
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
46
-0.2
1.2
41.3
40
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
71.6
0.49
1
67.2
42.5
Minor 5ss
51.1
0.04
2.4
71.2
39.8
Minor BPS
46.3
-0.2
2.1
62.92
40.8

Associated Gene:

Gene:
DNAH10
Ensembl Gene ID:
ENSAPLG00000014113
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014736
11323140 - 11378433
55294