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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_113780_115062_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
113780 - 115062
Intron Length:
1283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATACTT
5'SS Class:
major
3'SS Sequence:
TCTTTTATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTTCTTTTATT
Flanking Amino Acid:
KNSVLLGSISGGTDIISCFM
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
73.5
37.1
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
85.2
0.79
0.7
81
29.5
Minor 5ss
32.5
-2
3.3
48
47.5
Minor BPS
64.8
0.55
1.6
77.55
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018136
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025783
113425 - 122208
8784