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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11380950_11381548_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11380950 - 11381548
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCAACATGAATT
Flanking Amino Acid:
RLWALSLAHAQLSEVLWQMV
Intron Amino Acid Position:
760

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1.2
90.9
28.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
98.2
1.08
0.5
92.3
26.6
Minor 5ss
43
-0.8
2.9
59.7
38
Minor BPS
50
0.08
1.8
68.06
42.4

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361