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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11383151_11383406_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11383151 - 11383406
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATCAATTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
TGCATATCAATT
Flanking Amino Acid:
SGRRGIRTYRSGYKLIRKES
Intron Amino Acid Position:
681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
86.9
30.1
Major BPS
70.2
0.5
1
72.1
33
Major PPT
76.3
0.59
0.9
69.4
40.7
Minor 5ss
35.8
-1.6
2.9
43.1
43.9
Minor BPS
46.7
-0.1
1.8
62.61
41.5

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361