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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11383527_11384072_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11383527 - 11384072
Intron Length:
546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TACTTATGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTTTCCTACTT
Flanking Amino Acid:
GETDVFYTGQVGLQRFLLSI
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
66.5
0.37
1.1
62.4
42.1
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
53.5
0.19
1.9
75.59
41.9

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361