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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11384883_11385180_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11384883 - 11385180
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTTAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTTCTGAAAT
Flanking Amino Acid:
NGAYPFGIDPIWNLASNRLS
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.2
80.3
35.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
43
-0.8
2.8
61.1
43.2
Minor BPS
66.3
0.59
1.5
81.92
39.2

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361