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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11385272_11386773_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11385272 - 11386773
Intron Length:
1502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTAGATCTGATT
Flanking Amino Acid:
VSAMFEQKVWRLEDLKSNQF
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
72.6
38.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
31.1
-2.2
2.7
37.6
40
Minor BPS
45.3
-0.2
1.9
65.01
39.9

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361