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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11388024_11388789_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11388024 - 11388789
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTCCT
5'SS Class:
major
3'SS Sequence:
GTTGCCATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TGTGCCTGAAAT
Flanking Amino Acid:
GVGNYGEVNPALYTIITFPF
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.2
67.4
43.6
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
75.3
0.57
0.9
70.7
39.8
Minor 5ss
31.8
-2.1
3
42.9
44
Minor BPS
62.3
0.47
1.7
79.39
42

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361