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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11390074_11390457_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11390074 - 11390457
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTTCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAA
U12 Branch Point Sequence:
TGGTTATTAAGT
Flanking Amino Acid:
IGQKVKKICDCYHCHVYPYP
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.6
Major BPS
75.5
0.63
1
66.3
40.4
Major PPT
78.7
0.65
0.8
73.9
36.8
Minor 5ss
35.3
-1.7
3.1
46.5
42.9
Minor BPS
54.9
0.23
1.9
73.33
43.4

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361