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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11393209_11393766_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11393209 - 11393766
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCGTGTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCGTGTAACA
Flanking Amino Acid:
PLLKHILEIQEQLQKLETEL
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
74
0.54
1
69.2
40.7
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
49.5
-0
2.4
72.26
40.2

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361