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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11393865_11395093_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11393865 - 11395093
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCATTTCTGATT
Flanking Amino Acid:
KKCEEMERILGYLVQEIKKA
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
76.6
34.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
44.5
-0.6
3.1
61.3
44.6
Minor BPS
49.7
0.06
1.6
67.15
38.3

Associated Gene:

Gene:
ATP6V0A2
Ensembl Gene ID:
ENSAPLG00000014518
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015146
11379775 - 11398135
18361