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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11398136_11398633_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11398136 - 11398633
Intron Length:
498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGACAT
U12 Branch Point Sequence:
TTGTAGGTAATA
Flanking Amino Acid:
VPAQPPIPMTRFQINYTEFD
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
59.8
0.24
1.2
67
39.8
Major PPT
83.3
0.75
0.8
80.5
36.7
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
44
-0.4
2.6
63.65
43.3

Associated Gene:

Gene:
TCTN2
Ensembl Gene ID:
ENSAPLG00000014650
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015274
11397140 - 11407298
10159