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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11399599_11400004_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11399599 - 11400004
Intron Length:
406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTGAG
5'SS Class:
major
3'SS Sequence:
TGTTCTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTAACT
Flanking Amino Acid:
SDVNDWVEIIRLDPFNPNTS
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.3
39.5
Major BPS
100
1.24
0.5
100
0
Major PPT
81.6
0.71
0.8
76.4
32.3
Minor 5ss
33.4
-1.9
3.2
39.4
39.8
Minor BPS
75.2
0.87
1.4
90.66
32.3

Associated Gene:

Gene:
TCTN2
Ensembl Gene ID:
ENSAPLG00000014650
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015274
11397140 - 11407298
10159