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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11401085_11401382_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11401085 - 11401382
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAGTT
5'SS Class:
major
3'SS Sequence:
CTCCTACATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTCCTACATT
Flanking Amino Acid:
NNAEELSGNPGYQVGKPVRA
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
73.5
35.3
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
69
0.43
0.9
66.7
33.5
Minor 5ss
42.5
-0.8
3.5
64.9
46.4
Minor BPS
56.9
0.3
2.1
79.08
43.9

Associated Gene:

Gene:
TCTN2
Ensembl Gene ID:
ENSAPLG00000014650
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015274
11397140 - 11407298
10159