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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11404507_11404750_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11404507 - 11404750
Intron Length:
244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTACACCAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AATTTTTGAACT
Flanking Amino Acid:
PFLGYFYHGSIIPSFKIPLQ
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
52.9
0.07
1.1
49.7
37.7
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
67.6
0.63
1.3
80.17
35.2

Associated Gene:

Gene:
TCTN2
Ensembl Gene ID:
ENSAPLG00000014650
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015274
11397140 - 11407298
10159