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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11404948_11405188_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11404948 - 11405188
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAA
U12 Branch Point Sequence:
AATTACTGAGCT
Flanking Amino Acid:
ACDVRCCCDQECTPDLKQLF
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
83.9
34.3
Major BPS
61.3
0.28
1.1
61.7
34.1
Major PPT
91.3
0.93
0.6
89.3
19.5
Minor 5ss
40.7
-1
3.1
60.4
44
Minor BPS
52.8
0.17
1.9
74.38
41.4

Associated Gene:

Gene:
TCTN2
Ensembl Gene ID:
ENSAPLG00000014650
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015274
11397140 - 11407298
10159