Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11407119_11407190_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

11407119 - 11407190

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGA|GTTAATTTT

5'SS Class:

weak_major

3'SS Sequence:

CCCCCTCAAGTAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TAAGAAT

U12 Branch Point Sequence:

CCCCCCTCAAGT

Flanking Amino Acid:

NSFFHGNSSGHVNSFFFFFF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.5

0.18

1.2

39.1

Major BPS

55.1

0.13

1.4

64.3

39.7

Major PPT

58.5

0.19

0.9

54.9

Minor 5ss

43.1

-0.8

2.9

56.1

42.2

Minor BPS

48.1

-0

1.9

61.08

48.3

Associated Gene:

Gene:

TCTN2

Ensembl Gene ID:

ENSAPLG00000014650

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015274

11397140 - 11407298

10159