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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11408875_11408956_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11408875 - 11408956
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
TGTACCTGATAG
Flanking Amino Acid:
CNFSPICSTCETAFKISLPP
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79
35.3
Major BPS
70
0.5
1
59.3
39.1
Major PPT
92.5
0.96
0.6
92.6
17.3
Minor 5ss
39.9
-1.1
3.4
54.7
43.6
Minor BPS
47
-0.3
1.9
55.77
44.5

Associated Gene:

Gene:
GTF2H3
Ensembl Gene ID:
ENSAPLG00000014734
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015361
11408805 - 11411193
2389