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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11408994_11409074_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11408994 - 11409074
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTTTTTATTT
Flanking Amino Acid:
IGYVCSVCLSIFCNFSPICS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
60.9
0.42
1.5
74.66
36.6

Associated Gene:

Gene:
GTF2H3
Ensembl Gene ID:
ENSAPLG00000014734
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015361
11408805 - 11411193
2389