About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11409211_11409339_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11409211 - 11409339
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTGTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTCCTTTATT
Flanking Amino Acid:
HMPSLLQYLLWVFLPDQEQR
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
80.1
0.68
0.9
76.6
37.5
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
81.6
1.08
1.4
96.2
29.4

Associated Gene:

Gene:
GTF2H3
Ensembl Gene ID:
ENSAPLG00000014734
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015361
11408805 - 11411193
2389