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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11409409_11410097_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11409409 - 11410097
Intron Length:
689

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAGT
5'SS Class:
major
3'SS Sequence:
TTCTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ACAATCTGATCA
Flanking Amino Acid:
LDSDSGLLQQACDITGGIYL
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.9
44.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
87.7
0.85
0.8
80.2
37.3
Minor 5ss
32.3
-2
3.5
48.9
46.9
Minor BPS
45.9
-0.3
1.7
52
39.5

Associated Gene:

Gene:
GTF2H3
Ensembl Gene ID:
ENSAPLG00000014734
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015361
11408805 - 11411193
2389