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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11410150_11410628_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11410150 - 11410628
Intron Length:
479

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTTGTCATT
5'SS Class:
weak_major
3'SS Sequence:
TTTGCTTGCAGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCTTCATG
Flanking Amino Acid:
NVIFAAQKQVNILIDACVLD
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.4
0.01
1.2
60.4
44
Major BPS
100
1.24
0.5
100
0
Major PPT
54.4
0.1
1.7
64.3
41.5
Minor 5ss
42.1
-0.9
3.2
59
39.6
Minor BPS
60.3
0.18
1.8
67.31
41

Associated Gene:

Gene:
GTF2H3
Ensembl Gene ID:
ENSAPLG00000014734
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015361
11408805 - 11411193
2389