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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11410709_11410792_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11410709 - 11410792
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
CTTGCTTTATTT
Flanking Amino Acid:
ANQEMKSRILVIKAAEDSAL
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.9
31.6
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
78
0.63
0.9
77.9
35.6
Minor 5ss
32.2
-2
3.5
44.1
44.7
Minor BPS
58.7
0.35
1.7
74.81
43.2

Associated Gene:

Gene:
GTF2H3
Ensembl Gene ID:
ENSAPLG00000014734
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015361
11408805 - 11411193
2389