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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11413119_11413201_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
11413119 - 11413201
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACCGGGG
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTGAG
U12 Branch Point Sequence:
CGGGCCTGAGGC
Flanking Amino Acid:
AAGSAAMSTDDLIEAFRAQL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.4
0.11
1.3
41.1
45.6
Major BPS
44.9
-0.3
1.6
39
42.9
Major PPT
91.3
0.93
0.6
89.3
19.5
Minor 5ss
33.6
-1.9
3.8
45.9
49.3
Minor BPS
40.7
-0.7
1.9
43.46
44

Associated Gene:

Gene:
EIF2B1
Ensembl Gene ID:
ENSAPLG00000014771
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015404
11413022 - 11416772
3751