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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11413542_11413626_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11413542 - 11413626
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGGGCG
5'SS Class:
major
3'SS Sequence:
CCGTCTCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
GACGCCTCACCG
Flanking Amino Acid:
FISLTSLEYSDYSKCKEIMI
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
61.7
43
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
77.8
0.63
0.8
68.8
37.2
Minor 5ss
30
-2.3
3.5
39.7
45.8
Minor BPS
44.4
-0.5
2
45.35
46.5

Associated Gene:

Gene:
EIF2B1
Ensembl Gene ID:
ENSAPLG00000014771
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015404
11413022 - 11416772
3751