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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11415266_11415717_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11415266 - 11415717
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCTTCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAA
U12 Branch Point Sequence:
CCCCCTTCAACA
Flanking Amino Acid:
PVTVILDAAVGYIMEKVDLV
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
67.1
0.42
1.1
57.7
41.3
Major PPT
69.4
0.44
0.9
64.5
29.4
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
51
0.03
1.6
56.34
43.3

Associated Gene:

Gene:
EIF2B1
Ensembl Gene ID:
ENSAPLG00000014771
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015404
11413022 - 11416772
3751