About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11416112_11416547_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11416112 - 11416547
Intron Length:
436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CGTTTCCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TGTGTAATAACT
Flanking Amino Acid:
NQRDVPDKFKYKADTLKTSP
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
78.3
0.64
0.8
70
36.5
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
49.8
0.07
2
74.65
41.7

Associated Gene:

Gene:
EIF2B1
Ensembl Gene ID:
ENSAPLG00000014771
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015404
11413022 - 11416772
3751