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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11418635_11419389_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11418635 - 11419389
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGGTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTGAA
U12 Branch Point Sequence:
TTCAGCTGAACT
Flanking Amino Acid:
YVNFLSINQKCPMQEMKPQK
Intron Amino Acid Position:
389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1.1
84.4
27.7
Major BPS
58.2
0.2
1.1
49.1
38
Major PPT
87.2
0.84
0.8
84.6
36
Minor 5ss
31.4
-2.1
2.4
34
41.4
Minor BPS
56.8
0.29
2
77.64
44.4

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539