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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11419505_11420054_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11419505 - 11420054
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAACTT
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
CTCTGCTTAAAT
Flanking Amino Acid:
VLQYDPPSSASAFVHRCGRT
Intron Amino Acid Position:
350

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
69
41.8
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
36.2
-1.6
3.6
56.6
47.5
Minor BPS
60.9
0.42
1.9
76.73
45.7

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539