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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11420401_11420715_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11420401 - 11420715
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCCA
5'SS Class:
strong_major
3'SS Sequence:
ATCATCACAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCATCAT
U12 Branch Point Sequence:
ATTTCTGTCATC
Flanking Amino Acid:
HKQEKHLVFFSTCACVEYYG
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
73.5
37.2
Major BPS
75.6
0.64
1.1
76.2
37.5
Major PPT
62.7
0.29
1
56.2
38.1
Minor 5ss
34.6
-1.8
2.8
42.9
43.8
Minor BPS
48.3
-0.1
2.3
67.85
38.7

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539