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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11420799_11421057_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11420799 - 11421057
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGCGTTGTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ATTTCCTTATGT
Flanking Amino Acid:
TPTRLENYYMICKADEKFNQ
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
0.9
74.7
35.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
69.8
0.45
1
65.4
41
Minor 5ss
29.9
-2.3
3.7
43.1
45.5
Minor BPS
67.8
0.64
1.9
86.33
39.7

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539