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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11421248_11421727_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11421248 - 11421727
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TGCTTACTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATGTGCTTACTT
Flanking Amino Acid:
DRLLDMGFESSLNAILDFLP
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
80.1
0.68
0.9
73.7
35.8
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
54.1
0.21
2
73.7
43.9

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539