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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11421878_11422588_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11421878 - 11422588
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTAACCCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
ATGTCGTTAACC
Flanking Amino Acid:
MEDVEKFKEHGGNIIVATPG
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75
38.1
Major BPS
60.3
0.26
1
65.5
28
Major PPT
61.6
0.26
1
56
38.8
Minor 5ss
39.1
-1.2
2.8
40.9
45.4
Minor BPS
66.4
0.49
2.1
76.65
39.7

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539