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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11422652_11422764_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11422652 - 11422764
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTGTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
GTGACCTAAATC
Flanking Amino Acid:
SHFTEHFPMFSQILLIGGRN
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
73.7
32.5
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
81.6
0.71
0.8
80.5
31.5
Minor 5ss
25.2
-2.9
3.2
30.3
43.5
Minor BPS
56.1
0.17
1.7
63.68
42.1

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539