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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11422857_11423130_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11422857 - 11423130
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTCCATAAACT
Flanking Amino Acid:
RREQKLKKMQVGAIIITPTR
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
83.9
0.76
0.8
80.1
31.8
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
63.8
0.51
2
86.99
38.2

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539