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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11423218_11423305_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11423218 - 11423305
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TCCCATTTCACA
Flanking Amino Acid:
MSNKDVAAEAVTGSGKTLAF
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
81.7
31.9
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
76.8
0.6
0.8
70.9
33
Minor 5ss
33.7
-1.9
3.4
49.9
46.4
Minor BPS
47
-0.2
1.9
57.02
42.6

Associated Gene:

Gene:
DDX55
Ensembl Gene ID:
ENSAPLG00000015032
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015732
11417158 - 11423696
6539