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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11425566_11426442_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11425566 - 11426442
Intron Length:
877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTGTC
5'SS Class:
major
3'SS Sequence:
TTTCTCCTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGTTTTAAACT
Flanking Amino Acid:
MEVRERIHRAINDNTNSRVV
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
73.6
36
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.7
0.71
0.8
77.8
29.5
Minor 5ss
37.9
-1.4
3.5
52
39.4
Minor BPS
66.8
0.61
1.6
82.67
39.4

Associated Gene:

Gene:
TMED2
Ensembl Gene ID:
ENSAPLG00000015561
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016213
11425441 - 11429991
4551