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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11428905_11429811_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11428905 - 11429811
Intron Length:
907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTGTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGTTAAATAAAA
Flanking Amino Acid:
EGGFLDIDVEITGPDNKGIY
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
66.5
39.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
82.3
0.73
0.8
80.8
31.1
Minor 5ss
26.6
-2.7
3.1
33.5
41.9
Minor BPS
46.7
-0.2
2.1
65.52
39.5

Associated Gene:

Gene:
TMED2
Ensembl Gene ID:
ENSAPLG00000015561
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016213
11425441 - 11429991
4551