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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11432824_11436154_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11432824 - 11436154
Intron Length:
3331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGGGGG
5'SS Class:
major
3'SS Sequence:
ATCTACCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATGTGTTTAAAT
Flanking Amino Acid:
RIEKERKHQKELELVEDVWR
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
55
44.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
69.3
0.44
0.9
59.7
37.2
Minor 5ss
22.1
-3.2
3.4
28.8
43.7
Minor BPS
58.2
0.34
1.9
75.25
41.7

Associated Gene:

Gene:
RILPL1
Ensembl Gene ID:
ENSAPLG00000025541
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020474
11432518 - 11450508
17991