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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11436306_11441215_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11436306 - 11441215
Intron Length:
4910

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CCTTTTTTAACC
Flanking Amino Acid:
FTEEEFQKHEGMSERERQVM
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.8
1.13
0.8
81.8
38.5
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.2
0.66
0.9
74.5
39.2
Minor 5ss
33.5
-1.9
4
48.7
47.5
Minor BPS
72.5
0.69
1.2
72.92
38.9

Associated Gene:

Gene:
RILPL1
Ensembl Gene ID:
ENSAPLG00000025541
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020474
11432518 - 11450508
17991