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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_11441335_11442159_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11441335 - 11442159
Intron Length:
825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTGGC
5'SS Class:
major
3'SS Sequence:
TCTACATTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
GGATACTGAACT
Flanking Amino Acid:
LGLKNEDVEALQQQQNRLMK
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.1
63.9
41
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
79.9
0.67
0.9
73.4
35.9
Minor 5ss
35.9
-1.6
3.3
53.5
43.7
Minor BPS
58.7
0.35
1.7
73.33
42.2

Associated Gene:

Gene:
RILPL1
Ensembl Gene ID:
ENSAPLG00000025541
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020474
11432518 - 11450508
17991